Upgrade mise and uv tools during make update

Upgrade mise and uv tools during make update `make update` only ran `mise install` and the uv tool install list, which install missing tools but leave already-installed ones on their current versions. Tools pinned to `latest` therefore never moved once installed. Add `mise upgrade --yes` and `uv tool upgrade --all` so the target brings existing tooling current instead of only filling in what is missing.